##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index6_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	24382081	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.884993409709367	33.0	31.0	34.0	30.0	34.0
2	31.968518970960684	33.0	31.0	34.0	30.0	34.0
3	32.01771788880531	34.0	31.0	34.0	30.0	34.0
4	35.47868674540126	37.0	35.0	37.0	33.0	37.0
5	35.4759621625406	37.0	35.0	37.0	33.0	37.0
6	35.474026806817676	37.0	35.0	37.0	33.0	37.0
7	35.37945969419099	37.0	35.0	37.0	33.0	37.0
8	35.37671558879654	37.0	35.0	37.0	33.0	37.0
9	36.893227653537856	39.0	37.0	39.0	33.0	39.0
10-14	37.28685802495694	39.2	37.2	39.4	33.0	39.4
15-19	38.33105006910607	40.0	38.0	41.0	33.0	41.0
20-24	38.14193452150372	40.0	38.0	41.0	33.0	41.0
25-29	38.04254807454704	40.0	38.0	41.0	33.0	41.0
30-34	37.93718116185407	40.0	37.6	41.0	33.0	41.0
35-39	37.703064123197684	40.0	37.0	41.0	31.8	41.0
40-44	37.31139190293068	39.4	36.2	41.0	31.0	41.0
45-49	36.87016803856898	39.0	35.0	40.8	30.4	41.0
50-54	36.032693772118954	38.0	34.4	40.0	29.4	40.6
55-59	35.88738480525924	37.8	34.2	40.0	29.0	41.0
60-64	35.35889706050932	36.8	34.0	40.0	28.6	41.0
65-69	34.862634358404435	35.6	34.0	39.2	28.8	41.0
70-74	34.05539913512714	35.0	33.4	37.8	27.8	40.0
75-79	33.1879942897409	35.0	33.0	36.4	26.6	39.0
80-84	32.36939455660081	35.0	32.6	35.4	25.8	37.0
85-89	31.514345161924446	35.0	32.0	35.0	24.4	36.2
90	31.006495712978722	35.0	32.0	35.0	23.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	207.0
11	2274.0
12	6665.0
13	13389.0
14	21436.0
15	29534.0
16	37293.0
17	44074.0
18	51366.0
19	60353.0
20	71631.0
21	84625.0
22	100188.0
23	122414.0
24	149967.0
25	184163.0
26	227076.0
27	280968.0
28	342245.0
29	417183.0
30	512224.0
31	639549.0
32	808370.0
33	1047054.0
34	1419428.0
35	2035632.0
36	3122409.0
37	4546488.0
38	5016935.0
39	2902367.0
40	84573.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.705001309290648	11.891929512694608	10.610198547366089	53.79287063064866
2	21.935478010193542	18.699143380491428	34.24671470523168	25.118663904083345
3	25.768332169527074	20.54404028510772	22.0531812710574	31.634446274307805
4	28.00331408686437	25.754581089506058	19.075350841305386	27.16675398232418
5	29.842404179835015	28.546757138417355	21.673111683739567	19.937726998008063
6	25.382070329617235	31.75521583157953	21.303577663058647	21.559136175744587
7	22.268959098241268	18.877794875142197	36.45858321033699	22.39466281627955
8	22.243166354868755	22.228011586696006	28.466394198790923	27.062427859644316
9	22.037471366191088	20.94065029705168	31.105348780089265	25.916529556667967
10-14	25.002961859907636	25.71223586698838	24.287886602035133	24.99691567106885
15-19	25.291954917783844	24.709469136302403	24.748777302066834	25.249798643846916
20-24	25.081588214184556	24.942724189226265	25.088164621084385	24.887522975504794
25-29	24.93502460966167	24.966386168124096	25.014361909955756	25.084227312258477
30-34	24.96568242308425	24.90068861558785	24.976432556835437	25.157196404492467
35-39	24.977169836010663	25.06445946807941	24.930567787351464	25.02780290855846
40-44	24.946127896906827	24.891839465193524	25.05985575029563	25.10217688760402
45-49	24.88056213904655	24.964101801616078	24.994206302776348	25.161129756561024
50-54	24.9220415957645	25.04522707201761	25.037666872576004	24.995064459641885
55-59	24.94168937385133	24.978258048762967	24.974328755758936	25.105723821626768
60-64	24.83553719503872	25.00476733208546	25.09934365332514	25.06035181955068
65-69	24.880650069764894	25.121669793888813	25.080936006905645	24.916744129440648
70-74	24.92913492824337	25.04357654276325	24.99322062463371	25.03406790435967
75-79	24.909995474622033	25.00797656413805	25.06976135617922	25.012266605060695
80-84	24.85123332231832	25.138748330152367	25.08074231943916	24.929276028090158
85-89	24.95424084541907	25.08548693607995	25.007922957363565	24.952349261137417
90	24.677590883234725	25.22125605180382	25.231120141868995	24.87003292309246
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.4978719399393
2	47.05414191427689
3	57.402778443834876
4	55.17006806918856
5	49.78013117784308
6	46.94120650536182
7	44.66362191452081
8	49.30559421451307
9	47.95400092285905
10-14	49.999877530976484
15-19	50.54175356163076
20-24	49.96911118968935
25-29	50.01925192192015
30-34	50.12287882757671
35-39	50.00497274456913
40-44	50.04830478451085
45-49	50.04169189560758
50-54	49.917106055406386
55-59	50.0474131954781
60-64	49.8958890145894
65-69	49.79739419920554
70-74	49.96320283260304
75-79	49.922262079682724
80-84	49.78050935040847
85-89	49.906590106556486
90	49.54762380632719
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	20.0
1	18.5
2	17.5
3	22.5
4	32.0
5	47.0
6	65.5
7	85.0
8	103.5
9	140.5
10	170.0
11	198.0
12	267.5
13	377.5
14	538.5
15	771.0
16	1197.0
17	1920.0
18	3090.0
19	5192.0
20	6561.0
21	8719.0
22	14323.5
23	22767.5
24	34828.0
25	51928.5
26	75045.5
27	105907.0
28	142539.5
29	183888.5
30	206387.0
31	230618.5
32	279780.5
33	334732.5
34	395070.5
35	452781.0
36	512033.0
37	577040.5
38	634473.0
39	683903.5
40	709051.0
41	725669.0
42	759551.5
43	791526.0
44	811573.0
45	823174.0
46	827503.5
47	824850.5
48	827531.5
49	831888.0
50	832845.0
51	827194.0
52	823821.0
53	816988.5
54	813843.0
55	819331.0
56	812777.0
57	799608.5
58	779582.5
59	752030.0
60	737412.0
61	718979.5
62	679792.5
63	630990.5
64	572246.0
65	511019.0
66	445888.5
67	377502.5
68	315308.5
69	256909.0
70	226918.0
71	200372.5
72	151282.0
73	110956.0
74	77289.0
75	49627.0
76	29833.0
77	16338.5
78	7975.0
79	3589.0
80	2090.0
81	1543.0
82	731.0
83	362.5
84	197.0
85	122.0
86	88.5
87	62.5
88	46.0
89	32.5
90	30.0
91	27.0
92	21.5
93	13.5
94	6.0
95	4.5
96	4.0
97	2.0
98	1.0
99	1.5
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.2920464418110989
2	0.22199499706362225
3	0.27964389093777514
4	0.30237779949955873
5	0.2585300245700931
6	0.17089189392816798
7	0.21919786092089513
8	0.24486425092263456
9	0.22765078993872592
10-14	0.20259714500989479
15-19	0.1768421653590602
20-24	0.2036126448763746
25-29	0.036625257704623326
30-34	0.004056257544218641
35-39	0.004833877797387352
40-44	0.00943889900127885
45-49	0.012313961224228563
50-54	0.007266812049389879
55-59	0.004530376221783531
60-64	0.010734112482031374
65-69	0.005486816322199897
70-74	1.6897655290374928E-4
75-79	1.1976008118421065E-4
80-84	0.0033409781552280133
85-89	0.0016503923516618618
90	0.0029283800673125483
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.4382081E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.8034647117176
#Duplication Level	Relative count
1	100.0
2	29.982365123956775
3	15.557651690692477
4	9.713535792646667
5	6.816084647405008
6	5.0320913732647075
7	3.7597145610761378
8	3.1168618122910985
9	2.49759058379642
10++	28.580802591916665
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	5386660	2.6016738	5.4826756	1
CCTGG	5381345	2.5760682	6.3312645	1
CTTCT	5334325	2.5416858	5.6383767	1
CTGGA	5048670	2.4773266	8.711408	1
TCCAG	4944080	2.3823564	6.0414815	2
CTGCT	4931755	2.3553529	5.209849	1
CTCCT	4957860	2.325218	7.86082	1
CTGGG	4656990	2.2701626	8.493837	1
CAGGA	4565810	2.2604284	5.44265	1
CTTCA	4574275	2.199031	5.5562105	1
CTCCA	4639350	2.1952968	8.28207	1
CCCAG	4577925	2.1712854	7.440063	1
CAGAA	4239410	2.1126761	5.057182	1
CTCTG	4287125	2.0474846	6.443311	1
TGGAA	3729955	1.8760717	5.051726	2
CTGGC	3908050	1.8707973	5.240984	1
CTGAA	3765190	1.8597207	5.4308324	1
CTCAG	3637155	1.752601	5.902465	1
CTGGT	3456030	1.680804	5.200719	1
CTTGG	3346325	1.6274499	5.0879593	1
CTCCC	3342720	1.5431086	5.215428	1
>>END_MODULE
